MWL Species Fit Analysis

This module inputs the time-synchronized 2DSA-IT–based ISSF simulations and performs spectral deconvolution. For each spectral interval the measured absorbance is separated by the analytes’ extinction-coefficient spectra into SSF-ISSF- datasets. The SSF-ISSF- outputs are solute-resolved, spectrum-separated datasets generated for every solute

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Multi-Wavelength Species Fit Analysis Main Window

MWL Species Fit Process:

  1. Load the experiment ISSF- file using a Load Run Data Dialog.

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Loaded ISSF- Data

  1. Load the extinction-coefficient spectra file as a csv. This file can be generated by measuring serial dilution spectra of analyte and fitting using Spectrum Fitter.

  2. Click Species Fit Data and a simulation SSF-ISSF- dataset for every analyte extinction-coefficient spectra inputted will be generated and saved in the $HOME/ultrascan/imports folder.

../_images/mwl-spe-fitted.png

Saved Deconvoluted Data

  1. Click Save Data and the datasets and deconvolution quality report will be saved in the database.

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Saved Deconvoluted Data and Report

MWL Species Fit Functions:

Load Experiment

Load the time-synchronized ISSF- simulations generated in MWL Pre-Fit Species Simulation module.

Run Details

Bring up a Run Details Dialog with a summary of data and run details.

Latest Data Editor

Select latest edit of all data displayed.

Database

Load or save data from the database.

Local Disk

Load or save data from the local disk.

View Data Report

View the data report file.

Save Data

Save the simulated data in $HOME/ultrascan/imports

Load Species Fits

Load the extinction-coefficient spectra files of 2 or more species from local file. Files will be saved in csv format from Spectrum Fitter

Species Fit Data

Generate and save SSF-ISSF- simulation files.

Species to Plot:

Plot one of the at least 2 species deconvoluted from the original dataset.

Previous

Navigate to the previous datasets.

Next

Navigate to the next datasets.

Run ID/ Edit ID:

The run and edit identification labels.

Avg Temperature:

Average temperature of experiment.

Solution name:

Name of the original solution.

Cell / Channel / Wavelength

Triple identifier.

Scans focus

Select a scan range.

Exclude Scan range

Exclude selected scan range.

Reset Scan range

Reset all excluded scans.

Root-Mean-Square Deviation:

The Root-Mean-Square Deviation of the deconvolution.

Plot3D

RMSD, residuals and fitting plots of the Deconvolution.

Reset

Reset window.

Help

Open the MWL Species Fit Analysis help documentation.

Close

Close window.

../_images/mwl-spec-fit-report.png

Data Report

Spectral Decomposition Residual Plot


Assess the deconvolution RMSD and Residuals

../_images/mwl-spe_spec-decom.png

Empty Spectral Decomposition Residual Plot

../_images/mwl-spe_spec-decom-fit.png

Spectral Decomposition Residual Plot


../_images/mwl-spe_spec-decom-res.png

Empty Spectral Decomposition Residuals

../_images/mwl-spe_spec-decom-res-fit.png

Spectral Decomposition Residuals